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The ModFOLD Model Quality Assessment Server (Version 4.0)

NOTE: This version is no longer maintained. You are advised to use the latest version of ModFOLD, which is available here: ModFOLD home page

This form allows you to predict the quality of 3D models for a given protein target. Further information and references can be found on the ModFOLD home page. Before you submit a prediction please refer to the help page. Click 'Help' in each section for detailed instructions.

Required - Input sequence of protein target (single letter code) Help


Required - Upload model/models (either a single PDB file or a tarred and gzipped directory of PDB files) Help


Optional - E-mail address (you will be sent a link to graphical and machine readable results when the job is completed)Help


Optional - Short name for protein target Help



Please cite the following papers:

McGuffin, L. J., Buenavista, M. T., & Roche, D. B. (2013) The ModFOLD4 Server for the Quality Assessment of 3D Protein Models. Nucleic Acids Res., 41, W368-72. PubMed

The server implements the IntFOLD2-TS method to generate alternative models:

Buenavista, M. T., Roche, D. B. & McGuffin, L. J. (2012) Improvement of 3D protein models using multiple templates guided by single-template model quality assessment. Bioinformatics, 28, 1851-1857. PubMed

The server implements ModFOLDclust2 to cluster models:

McGuffin, L. J. & Roche, D. B. (2010) Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments. Bioinformatics, 26, 182-188. PubMed

Contact

Tel: 0118 378 6332

Email: l.j.mcguffin
@reading.ac.uk

 

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